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annotate lib/patchablegraph.py @ 473:388769b5f8ff

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stats support and maybe a no-op filtering logic change snuck in there Ignore-this: d54125308243159b28ef11e2d09014f4
author drewp@bigasterisk.com
date Sat, 20 Apr 2019 23:51:02 -0700
parents fcd2c026f51e
children 1d2817cb9a6f
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1 """
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2 Design:
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3
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4 1. Services each have (named) graphs, which they patch as things
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5 change. PatchableGraph is an object for holding this graph.
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6 2. You can http GET that graph, or ...
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7 3. You can http GET/SSE that graph and hear about modifications to it
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8 4. The client that got the graph holds and maintains a copy. The
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9 client may merge together multiple graphs.
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10 5. Client queries its graph with low-level APIs or client-side sparql.
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11 6. When the graph changes, the client knows and can update itself at
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12 low or high granularity.
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13
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14
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15 See also:
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16 * http://iswc2007.semanticweb.org/papers/533.pdf RDFSync: efficient remote synchronization of RDF
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17 models
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18 * https://www.w3.org/2009/12/rdf-ws/papers/ws07 Supporting Change Propagation in RDF
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19 * https://www.w3.org/DesignIssues/lncs04/Diff.pdf Delta: an ontology for the distribution of
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20 differences between RDF graphs
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21
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22 """
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23 import sys, json, logging, itertools
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24 import cyclone.sse
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25 sys.path.append("/my/proj/rdfdb")
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26 from rdfdb.grapheditapi import GraphEditApi
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27 from rdflib import ConjunctiveGraph
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28 from rdfdb.rdflibpatch import patchQuads
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29 from rdfdb.patch import Patch
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30 from rdflib_jsonld.serializer import from_rdf
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31 from rdflib.parser import StringInputSource
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32 from cycloneerr import PrettyErrorHandler
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33 from greplin import scales
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34
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35 log = logging.getLogger('patchablegraph')
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36
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37 def writeGraphResponse(req, graph, acceptHeader):
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38 if acceptHeader == 'application/nquads':
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39 req.set_header('Content-type', 'application/nquads')
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40 graph.serialize(req, format='nquads')
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41 elif acceptHeader == 'application/ld+json':
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42 req.set_header('Content-type', 'application/ld+json')
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43 graph.serialize(req, format='json-ld', indent=2)
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44 else:
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45 req.set_header('Content-type', 'application/x-trig')
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46 graph.serialize(req, format='trig')
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47
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48 # forked from /my/proj/light9/light9/rdfdb/rdflibpatch.py
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49 def _graphFromQuads2(q):
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50 g = ConjunctiveGraph()
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51 #g.addN(q) # no effect on nquad output
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52 for s,p,o,c in q:
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53 g.get_context(c).add((s,p,o)) # kind of works with broken rdflib nquad serializer code
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54 #g.store.add((s,p,o), c) # no effect on nquad output
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55 return g
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56
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57 def jsonFromPatch(p):
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58 return json.dumps({'patch': {
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59 'adds': from_rdf(_graphFromQuads2(p.addQuads)),
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60 'deletes': from_rdf(_graphFromQuads2(p.delQuads)),
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61 }})
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62 patchAsJson = jsonFromPatch # deprecated name
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63
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64
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65 def patchFromJson(j):
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66 body = json.loads(j)['patch']
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67 a = ConjunctiveGraph()
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68 a.parse(StringInputSource(json.dumps(body['adds'])), format='json-ld')
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69 d = ConjunctiveGraph()
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70 d.parse(StringInputSource(json.dumps(body['deletes'])), format='json-ld')
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71 return Patch(addGraph=a, delGraph=d)
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72
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73 def graphAsJson(g):
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74 # This is not the same as g.serialize(format='json-ld')! That
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75 # version omits literal datatypes.
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76 return json.dumps(from_rdf(g))
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77
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78 _graphsInProcess = itertools.count()
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79 class PatchableGraph(GraphEditApi):
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80 """
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81 Master graph that you modify with self.patch, and we get the
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82 updates to all current listeners.
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83 """
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84 def __init__(self):
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85 self._graph = ConjunctiveGraph()
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86 self._observers = []
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87 scales.init(self, '/patchableGraph%s' % next(_graphsInProcess))
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88
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89 _serialize = scales.PmfStat('serialize')
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90 def serialize(self, to, **kw):
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91 with self._serialize.time():
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92 return self._graph.serialize(to, **kw)
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93
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94 _patch = scales.PmfStat('patch')
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95 _len = scales.IntStat('statementCount')
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96 def patch(self, p):
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97 with self._patch.time():
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98 # assuming no stmt is both in p.addQuads and p.delQuads.
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99 dels = set([q for q in p.delQuads if inGraph(q, self._graph)])
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100 adds = set([q for q in p.addQuads if not inGraph(q, self._graph)])
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101 minimizedP = Patch(addQuads=adds, delQuads=dels)
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102 if minimizedP.isNoop():
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103 return
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104 patchQuads(self._graph,
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105 deleteQuads=dels,
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106 addQuads=adds,
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107 perfect=False) # true?
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108 for ob in self._observers:
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109 ob(patchAsJson(p))
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110 self._len = len(self._graph)
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111
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112 def asJsonLd(self):
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113 return graphAsJson(self._graph)
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114
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115 _currentObservers = scales.IntStat('observers/current')
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116 _observersAdded = scales.IntStat('observers/added')
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117 def addObserver(self, onPatch):
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118 self._observers.append(onPatch)
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119 self._currentObservers = len(self._observers)
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120 self._observersAdded += 1
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121
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122 def removeObserver(self, onPatch):
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123 try:
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124 self._observers.remove(onPatch)
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125 except ValueError:
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126 pass
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127 self._currentObservers = len(self._observers)
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128
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129 def setToGraph(self, newGraph):
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130 self.patch(Patch.fromDiff(self._graph, newGraph))
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131
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132 _sendSimpleGraph = scales.PmfStat('serve/simpleGraph')
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133 _sendFullGraph = scales.PmfStat('serve/events/sendFull')
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134 _sendPatch = scales.PmfStat('serve/events/sendPatch')
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135
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136 class CycloneGraphHandler(PrettyErrorHandler, cyclone.web.RequestHandler):
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137 def initialize(self, masterGraph):
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138 self.masterGraph = masterGraph
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139
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140 def get(self):
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141 with self.masterGraph._sendSimpleGraph.time():
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142 writeGraphResponse(self, self.masterGraph,
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143 self.request.headers.get('accept'))
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144
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145
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146 class CycloneGraphEventsHandler(cyclone.sse.SSEHandler):
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147 """
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148 One session with one client.
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149
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150 returns current graph plus future patches to keep remote version
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151 in sync with ours.
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152
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153 intsead of turning off buffering all over, it may work for this
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154 response to send 'x-accel-buffering: no', per
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155 http://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_buffering
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156 """
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157 def __init__(self, application, request, masterGraph):
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158 cyclone.sse.SSEHandler.__init__(self, application, request)
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159 self.masterGraph = masterGraph
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160
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161 def bind(self):
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162 with self.masterGraph._sendFullGraph.time():
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163 graphJson = self.masterGraph.asJsonLd()
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164 log.debug("send fullGraph event: %s", graphJson)
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165 self.sendEvent(message=graphJson, event=b'fullGraph')
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166 self.masterGraph.addObserver(self.onPatch)
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167
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168 def onPatch(self, patchJson):
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169 with self.masterGraph._sendPatch.time():
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170 # throttle and combine patches here- ideally we could see how
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171 # long the latency to the client is to make a better rate choice
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172 self.sendEvent(message=patchJson, event=b'patch')
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173
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174 def unbind(self):
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175 self.masterGraph.removeObserver(self.onPatch)
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176