annotate service/mqtt_to_rdf/inference.py @ 1637:ec3f98d0c1d8

refactor rules eval
author drewp@bigasterisk.com
date Mon, 13 Sep 2021 01:36:06 -0700
parents 3252bdc284bc
children 0ba1625037ae
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1 """
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2 copied from reasoning 2021-08-29. probably same api. should
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3 be able to lib/ this out
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4 """
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5 import itertools
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6 import logging
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7 import time
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8 from collections import defaultdict
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9 from dataclasses import dataclass
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10 from typing import (Dict, Iterator, List, Optional, Sequence, Set, Tuple, Union, cast)
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11
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12 from prometheus_client import Histogram, Summary
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13 from rdflib import RDF, BNode, Graph, Namespace
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14 from rdflib.graph import ConjunctiveGraph, ReadOnlyGraphAggregate
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15 from rdflib.term import Node, Variable
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16
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17 from candidate_binding import CandidateBinding
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18 from inference_types import BindingUnknown, ReadOnlyWorkingSet, Triple
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19 from lhs_evaluation import functionsFor, lhsStmtsUsedByFuncs
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20
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21 log = logging.getLogger('infer')
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22 INDENT = ' '
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23
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24 INFER_CALLS = Summary('inference_infer_calls', 'calls')
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25 INFER_GRAPH_SIZE = Histogram('inference_graph_size', 'statements', buckets=[2**x for x in range(2, 20, 2)])
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26
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27 ROOM = Namespace("http://projects.bigasterisk.com/room/")
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28 LOG = Namespace('http://www.w3.org/2000/10/swap/log#')
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29 MATH = Namespace('http://www.w3.org/2000/10/swap/math#')
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31
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32 def stmtTemplate(stmt: Triple) -> Tuple[Optional[Node], Optional[Node], Optional[Node]]:
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33 return (
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34 None if isinstance(stmt[0], (Variable, BNode)) else stmt[0],
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35 None if isinstance(stmt[1], (Variable, BNode)) else stmt[1],
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36 None if isinstance(stmt[2], (Variable, BNode)) else stmt[2],
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37 )
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38
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39
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40 class NoOptions(ValueError):
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41 """stmtlooper has no possibilites to add to the binding; the whole rule must therefore not apply"""
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42
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43
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44 class Inconsistent(ValueError):
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45 """adding this stmt would be inconsistent with an existing binding"""
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46
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47
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48 _stmtLooperShortId = itertools.count()
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49
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50
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51 @dataclass
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52 class StmtLooper:
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53 """given one LHS stmt, iterate through the possible matches for it,
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54 returning what bindings they would imply. Only distinct bindings are
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55 returned. The bindings build on any `prev` StmtLooper's results.
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56
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57 This iterator is restartable."""
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58 lhsStmt: Triple
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59 prev: Optional['StmtLooper']
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60 workingSet: ReadOnlyWorkingSet
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61 parent: 'Lhs' # just for lhs.graph, really
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62
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63 def __repr__(self):
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64 return f'StmtLooper{self._shortId}({graphDump([self.lhsStmt])} {"<pastEnd>" if self.pastEnd() else ""})'
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65
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66 def __post_init__(self):
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67 self._shortId = next(_stmtLooperShortId)
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68 self._myWorkingSetMatches = self._myMatches(self.workingSet)
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69
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70 self._current = CandidateBinding({})
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71 self._pastEnd = False
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72 self._seenBindings: List[CandidateBinding] = []
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73 self.restart()
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74
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75 def _myMatches(self, g: Graph) -> List[Triple]:
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76 template = stmtTemplate(self.lhsStmt)
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77
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78 stmts = sorted(cast(Iterator[Triple], list(g.triples(template))))
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79 # plus new lhs possibilties...
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80 # log.debug(f'{INDENT*6} {self} find {len(stmts)=} in {len(self.workingSet)=}')
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81
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82 return stmts
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83
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84 def _prevBindings(self) -> CandidateBinding:
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85 if not self.prev or self.prev.pastEnd():
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86 return CandidateBinding({})
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87
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88 return self.prev.currentBinding()
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89
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90 def advance(self):
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91 """update to a new set of bindings we haven't seen (since last restart), or go into pastEnd mode"""
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92 if self._pastEnd:
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93 raise NotImplementedError('need restart')
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94 log.debug('')
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95 augmentedWorkingSet: Sequence[Triple] = []
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96 if self.prev is None:
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97 augmentedWorkingSet = self._myWorkingSetMatches
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98 else:
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99 augmentedWorkingSet = list(self.prev.currentBinding().apply(self._myWorkingSetMatches,
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100 returnBoundStatementsOnly=False))
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101
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102 log.debug(f'{INDENT*6} {self}.advance has {augmentedWorkingSet=}')
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103
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104 if self._advanceWithPlainMatches(augmentedWorkingSet):
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105 return
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106
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107 curBind = self.prev.currentBinding() if self.prev else CandidateBinding({})
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108 [lhsStmtBound] = curBind.apply([self.lhsStmt], returnBoundStatementsOnly=False)
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109
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110 fullWorkingSet = self.workingSet + self.parent.graph
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111 boundFullWorkingSet = list(curBind.apply(fullWorkingSet, returnBoundStatementsOnly=False))
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112 log.debug(f'{fullWorkingSet.__len__()=} {len(boundFullWorkingSet)=}')
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113
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114 if self._advanceWithFunctions(augmentedWorkingSet, boundFullWorkingSet, lhsStmtBound):
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115 return
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116
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117 log.debug(f'{INDENT*6} {self} is past end')
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118 self._pastEnd = True
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119
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120 def _advanceWithPlainMatches(self, augmentedWorkingSet: Sequence[Triple]) -> bool:
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121 log.debug(f'{INDENT*7} {self} mines {len(augmentedWorkingSet)} matching augmented statements')
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122 for s in augmentedWorkingSet:
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123 log.debug(f'{INDENT*7} {s}')
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124
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125 for stmt in augmentedWorkingSet:
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126 try:
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127 outBinding = self._totalBindingIfThisStmtWereTrue(stmt)
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128 except Inconsistent:
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129 log.debug(f'{INDENT*7} {self} - {stmt} would be inconsistent with prev bindings')
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130 continue
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131
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132 log.debug(f'{INDENT*7} {outBinding=} {self._seenBindings=}')
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133 if outBinding not in self._seenBindings:
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134 self._seenBindings.append(outBinding.copy())
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135 self._current = outBinding
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136 log.debug(f'{INDENT*7} new binding from {self} -> {outBinding}')
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137 return True
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138 return False
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139
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140 def _advanceWithFunctions(self, augmentedWorkingSet: Sequence[Triple], boundFullWorkingSet, lhsStmtBound) -> bool:
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141 pred: Node = self.lhsStmt[1]
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142
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143 for functionType in functionsFor(pred):
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144 fn = functionType(self.lhsStmt, self.parent.graph)
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145 try:
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146 out = fn.bind(self._prevBindings())
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147 except BindingUnknown:
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148 pass
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149 else:
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150 if out is not None:
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151 binding: CandidateBinding = self._prevBindings().copy()
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152 binding.addNewBindings(out)
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153 if binding not in self._seenBindings:
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154 self._seenBindings.append(binding)
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155 self._current = binding
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156 log.debug(f'{INDENT*7} new binding from {self} -> {binding}')
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157 return True
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158
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159 return False
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160
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161 def _boundOperands(self, operands) -> List[Node]:
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162 pb: CandidateBinding = self._prevBindings()
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163
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164 boundOperands: List[Node] = []
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165 for op in operands:
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166 if isinstance(op, (Variable, BNode)):
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167 boundOperands.append(pb.applyTerm(op))
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168 else:
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169 boundOperands.append(op)
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170 return boundOperands
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171
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172 def _totalBindingIfThisStmtWereTrue(self, newStmt: Triple) -> CandidateBinding:
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173 outBinding = self._prevBindings().copy()
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174 for rt, ct in zip(self.lhsStmt, newStmt):
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175 if isinstance(rt, (Variable, BNode)):
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176 if outBinding.contains(rt) and outBinding.applyTerm(rt) != ct:
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177 raise Inconsistent(f'{rt=} {ct=} {outBinding=}')
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178 outBinding.addNewBindings(CandidateBinding({rt: ct}))
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179 return outBinding
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180
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181 def currentBinding(self) -> CandidateBinding:
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182 if self.pastEnd():
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183 raise NotImplementedError()
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184 return self._current
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185
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186 def pastEnd(self) -> bool:
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187 return self._pastEnd
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188
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189 def restart(self):
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190 self._pastEnd = False
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191 self._seenBindings = []
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192 self.advance()
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193 if self.pastEnd():
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194 raise NoOptions()
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195
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196
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197 @dataclass
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198 class Lhs:
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199 graph: Graph
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200
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201 def __post_init__(self):
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202 pass
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203
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204 def __repr__(self):
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205 return f"Lhs({graphDump(self.graph)})"
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206
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207 def findCandidateBindings(self, knownTrue: ReadOnlyWorkingSet, stats) -> Iterator['BoundLhs']:
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208 """bindings that fit the LHS of a rule, using statements from workingSet and functions
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209 from LHS"""
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210 if self.graph.__len__() == 0:
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211 # special case- no LHS!
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212 yield BoundLhs(self, CandidateBinding({}))
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213 return
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214
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215 log.debug(f'{INDENT*4} build new StmtLooper stack')
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216
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217 try:
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218 stmtStack = self._assembleRings(knownTrue)
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219 except NoOptions:
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220 log.debug(f'{INDENT*5} start up with no options; 0 bindings')
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221 return
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222 self._debugStmtStack('initial odometer', stmtStack)
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223 self._assertAllRingsAreValid(stmtStack)
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224
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225 lastRing = stmtStack[-1]
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226 iterCount = 0
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227 while True:
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228 iterCount += 1
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229 if iterCount > 10:
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230 raise ValueError('stuck')
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231
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232 log.debug(f'{INDENT*4} vv findCandBindings iteration {iterCount}')
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233
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234 yield BoundLhs(self, lastRing.currentBinding())
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235
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236 self._debugStmtStack('odometer', stmtStack)
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237
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diff changeset
238 done = self._advanceAll(stmtStack)
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diff changeset
239
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240 self._debugStmtStack('odometer after ({done=})', stmtStack)
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241
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242 log.debug(f'{INDENT*4} ^^ findCandBindings iteration done')
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diff changeset
243 if done:
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diff changeset
244 break
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245
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246 def _debugStmtStack(self, label, stmtStack):
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247 log.debug(f'{INDENT*5} {label}:')
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248 for l in stmtStack:
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249 log.debug(f'{INDENT*6} {l} curbind={l.currentBinding() if not l.pastEnd() else "<end>"}')
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diff changeset
250
1633
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251 def _assembleRings(self, knownTrue: ReadOnlyWorkingSet) -> List[StmtLooper]:
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252 """make StmtLooper for each stmt in our LHS graph, but do it in a way that they all
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253 start out valid (or else raise NoOptions)"""
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diff changeset
254
1637
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diff changeset
255 usedByFuncs: Set[Triple] = lhsStmtsUsedByFuncs(self.graph)
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diff changeset
256
1637
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diff changeset
257 stmtsToAdd = list(self.graph - usedByFuncs)
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diff changeset
258
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diff changeset
259 # sort them by variable dependencies; don't just try all perms!
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260 def lightSortKey(stmt): # Not this. Though it helps performance on the big rdf list cases.
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diff changeset
261 (s, p, o) = stmt
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diff changeset
262 return p == MATH['sum'], p, s, o
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263
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diff changeset
264 stmtsToAdd.sort(key=lightSortKey)
1633
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265
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diff changeset
266 for perm in itertools.permutations(stmtsToAdd):
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267 stmtStack: List[StmtLooper] = []
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268 prev: Optional[StmtLooper] = None
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diff changeset
269 log.debug(f'{INDENT*5} try stmts in this order: {" -> ".join(graphDump([p]) for p in perm)}')
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270
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diff changeset
271 for s in perm:
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diff changeset
272 try:
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diff changeset
273 elem = StmtLooper(s, prev, knownTrue, parent=self)
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274 except NoOptions:
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275 log.debug(f'{INDENT*6} permutation didnt work, try another')
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276 break
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277 stmtStack.append(elem)
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278 prev = stmtStack[-1]
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279 else:
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280 return stmtStack
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281 log.debug(f'{INDENT*6} no perms worked- rule cannot match anything')
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282
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283 raise NoOptions()
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284
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285 def _advanceAll(self, stmtStack: List[StmtLooper]) -> bool:
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286 carry = True # 1st elem always must advance
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287 for i, ring in enumerate(stmtStack):
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288 # unlike normal odometer, advancing any earlier ring could invalidate later ones
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289 if carry:
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290 log.debug(f'{INDENT*5} advanceAll [{i}] {ring} carry/advance')
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291 ring.advance()
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292 carry = False
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293 if ring.pastEnd():
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294 if ring is stmtStack[-1]:
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295 log.debug(f'{INDENT*5} advanceAll [{i}] {ring} says we done')
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296 return True
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297 log.debug(f'{INDENT*5} advanceAll [{i}] {ring} restart')
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298 ring.restart()
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299 carry = True
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300 return False
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301
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302 def _assertAllRingsAreValid(self, stmtStack):
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303 if any(ring.pastEnd() for ring in stmtStack): # this is an unexpected debug assertion
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304 log.debug(f'{INDENT*5} some rings started at pastEnd {stmtStack}')
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305 raise NoOptions()
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306
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307
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308 @dataclass
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309 class BoundLhs:
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310 lhs: Lhs
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311 binding: CandidateBinding
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312
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313
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314 @dataclass
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315 class Rule:
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316 lhsGraph: Graph
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317 rhsGraph: Graph
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318
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319 def __post_init__(self):
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320 self.lhs = Lhs(self.lhsGraph)
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321 #
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322 self.rhsBnodeMap = {}
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323
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324 def applyRule(self, workingSet: Graph, implied: Graph, stats: Dict):
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325 for bound in self.lhs.findCandidateBindings(ReadOnlyGraphAggregate([workingSet]), stats):
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326 log.debug(f'{INDENT*5} +rule has a working binding: {bound}')
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327
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328 # rhs could have more bnodes, and they just need to be distinct per rule-firing that we do
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329 existingRhsBnodes = set()
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330 for stmt in self.rhsGraph:
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331 for t in stmt:
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332 if isinstance(t, BNode):
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333 existingRhsBnodes.add(t)
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334 # if existingRhsBnodes:
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335 # log.debug(f'{INDENT*6} mapping rhs bnodes {existingRhsBnodes} to new ones')
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336
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337 for b in existingRhsBnodes:
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338
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339 key = tuple(sorted(bound.binding.binding.items())), b
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340 self.rhsBnodeMap.setdefault(key, BNode())
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341
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342 bound.binding.addNewBindings(CandidateBinding({b: self.rhsBnodeMap[key]}))
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343
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344 # for lhsBoundStmt in bound.binding.apply(bound.lhsStmtsWithoutEvals()):
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345 # log.debug(f'{INDENT*6} adding to workingSet {lhsBoundStmt=}')
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346 # workingSet.add(lhsBoundStmt)
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347 # log.debug(f'{INDENT*6} rhsGraph is good: {list(self.rhsGraph)}')
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348
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349 for newStmt in bound.binding.apply(self.rhsGraph):
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350 # log.debug(f'{INDENT*6} adding {newStmt=}')
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351 workingSet.add(newStmt)
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352 implied.add(newStmt)
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353
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354
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355 class Inference:
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356
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357 def __init__(self) -> None:
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358 self.rules = []
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359
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360 def setRules(self, g: ConjunctiveGraph):
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361 self.rules: List[Rule] = []
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362 for stmt in g:
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363 if stmt[1] == LOG['implies']:
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364 self.rules.append(Rule(stmt[0], stmt[2]))
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365 # other stmts should go to a default working set?
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366
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367 @INFER_CALLS.time()
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368 def infer(self, graph: Graph):
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369 """
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370 returns new graph of inferred statements.
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371 """
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372 n = graph.__len__()
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373 INFER_GRAPH_SIZE.observe(n)
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374 log.info(f'{INDENT*0} Begin inference of graph len={n} with rules len={len(self.rules)}:')
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375 startTime = time.time()
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376 stats: Dict[str, Union[int, float]] = defaultdict(lambda: 0)
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377 # everything that is true: the input graph, plus every rule conclusion we can make
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378 workingSet = Graph()
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379 workingSet += graph
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380
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381 # just the statements that came from RHS's of rules that fired.
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382 implied = ConjunctiveGraph()
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383
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384 bailout_iterations = 100
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385 delta = 1
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386 stats['initWorkingSet'] = cast(int, workingSet.__len__())
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387 while delta > 0 and bailout_iterations > 0:
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388 log.debug('')
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389 log.info(f'{INDENT*1}*iteration ({bailout_iterations} left)')
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390 bailout_iterations -= 1
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391 delta = -len(implied)
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392 self._iterateAllRules(workingSet, implied, stats)
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393 delta += len(implied)
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394 stats['iterations'] += 1
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395 log.info(f'{INDENT*2} this inference iteration added {delta} more implied stmts')
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396 stats['timeSpent'] = round(time.time() - startTime, 3)
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397 stats['impliedStmts'] = len(implied)
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398 log.info(f'{INDENT*0} Inference done {dict(stats)}. Implied:')
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399 for st in implied:
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400 log.info(f'{INDENT*1} {st}')
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401 return implied
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402
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403 def _iterateAllRules(self, workingSet: Graph, implied: Graph, stats):
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404 for i, rule in enumerate(self.rules):
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405 self._logRuleApplicationHeader(workingSet, i, rule)
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406 rule.applyRule(workingSet, implied, stats)
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407
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408 def _logRuleApplicationHeader(self, workingSet, i, r: Rule):
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409 if not log.isEnabledFor(logging.DEBUG):
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410 return
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411
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412 log.debug('')
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parents: 1593
diff changeset
413 log.debug(f'{INDENT*2} workingSet:')
1597
387a9cb66517 logging adjustments
drewp@bigasterisk.com
parents: 1596
diff changeset
414 for j, stmt in enumerate(sorted(workingSet)):
387a9cb66517 logging adjustments
drewp@bigasterisk.com
parents: 1596
diff changeset
415 log.debug(f'{INDENT*3} ({j}) {stmt}')
1594
e58bcfa66093 cleanups and a few fixed cases
drewp@bigasterisk.com
parents: 1593
diff changeset
416
e58bcfa66093 cleanups and a few fixed cases
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parents: 1593
diff changeset
417 log.debug('')
e58bcfa66093 cleanups and a few fixed cases
drewp@bigasterisk.com
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418 log.debug(f'{INDENT*2}-applying rule {i}')
1632
bd79a2941cab just (a lot of) debug changes
drewp@bigasterisk.com
parents: 1631
diff changeset
419 log.debug(f'{INDENT*3} rule def lhs:')
1634
ba59cfc3c747 hack math:sum in there. Test suite is passing except some slow performers
drewp@bigasterisk.com
parents: 1633
diff changeset
420 for stmt in sorted(r.lhsGraph, reverse=True):
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bd79a2941cab just (a lot of) debug changes
drewp@bigasterisk.com
parents: 1631
diff changeset
421 log.debug(f'{INDENT*4} {stmt}')
1607
b21885181e35 more modules, types. Maybe less repeated computation on BoundLhs
drewp@bigasterisk.com
parents: 1605
diff changeset
422 log.debug(f'{INDENT*3} rule def rhs: {graphDump(r.rhsGraph)}')
1594
e58bcfa66093 cleanups and a few fixed cases
drewp@bigasterisk.com
parents: 1593
diff changeset
423
1588
0757fafbfdab WIP inferencer - partial var and function support
drewp@bigasterisk.com
parents: 1587
diff changeset
424
1590
327202020892 WIP inference- getting into more degenerate test cases
drewp@bigasterisk.com
parents: 1589
diff changeset
425 def graphDump(g: Union[Graph, List[Triple]]):
1637
ec3f98d0c1d8 refactor rules eval
drewp@bigasterisk.com
parents: 1636
diff changeset
426 # this is very slow- debug only!
ec3f98d0c1d8 refactor rules eval
drewp@bigasterisk.com
parents: 1636
diff changeset
427 if not log.isEnabledFor(logging.DEBUG):
ec3f98d0c1d8 refactor rules eval
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parents: 1636
diff changeset
428 return "(skipped dump)"
1590
327202020892 WIP inference- getting into more degenerate test cases
drewp@bigasterisk.com
parents: 1589
diff changeset
429 if not isinstance(g, Graph):
327202020892 WIP inference- getting into more degenerate test cases
drewp@bigasterisk.com
parents: 1589
diff changeset
430 g2 = Graph()
1594
e58bcfa66093 cleanups and a few fixed cases
drewp@bigasterisk.com
parents: 1593
diff changeset
431 g2 += g
1590
327202020892 WIP inference- getting into more degenerate test cases
drewp@bigasterisk.com
parents: 1589
diff changeset
432 g = g2
1589
5c1055be3c36 WIP more debugging, working towards bnode-matching support
drewp@bigasterisk.com
parents: 1588
diff changeset
433 g.bind('', ROOM)
5c1055be3c36 WIP more debugging, working towards bnode-matching support
drewp@bigasterisk.com
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434 g.bind('ex', Namespace('http://example.com/'))
5c1055be3c36 WIP more debugging, working towards bnode-matching support
drewp@bigasterisk.com
parents: 1588
diff changeset
435 lines = cast(bytes, g.serialize(format='n3')).decode('utf8').splitlines()
1612
272f78d4671a mark skipped tests. move applyRule into Rule. minor cleanups.
drewp@bigasterisk.com
parents: 1611
diff changeset
436 lines = [line.strip() for line in lines if not line.startswith('@prefix')]
1589
5c1055be3c36 WIP more debugging, working towards bnode-matching support
drewp@bigasterisk.com
parents: 1588
diff changeset
437 return ' '.join(lines)